Team:Heidelberg/Model/Lagoon Contamination
Modeling.
Lagoon contamination
text
Table 1: Additional Variables and Parameters used for the calculation of the number of mutated sequences List of all additional paramters and variables used in the numeric solution of this model. When possible values are given.
| Symbol | Value and Unit | Explanation |
|---|---|---|
| \(t \) | [h] | Total time in lagoon |
| \(p_{m} \) | [bp/bp] | Expected number of mutations per sequence |
| \(p_{M} \) | [bp/sequences] | Expected number of mutations in all sequences |
| \(N_{M} \) | [bp] | Number of mutated basepairs |
| \(L_{S} \) | [bp] | Length of sequence that is considered |
| \(N_{g} \) | [generations] | Number of generations |
| \(r_{M} \) | \([\frac{1}{bp \cdot generation}]\) | |
| \(\Phi_{L} \) | [Vol/h] | |
| \(N_{S} \) | [sequences] | Number of sequences |
| \(p_{(N_{M} > 0)} \) | Probability to find at least one mutated sequence in a pool of sequences | |
| \(p_{(N_{M} = 0)} \) | Probability to find no mutated sequences in a pool of sequences |
