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| − | <img class="one" src="https://static.igem.org/mediawiki/2017/d/d8/2017--Team_NEFU--result--bt.png" alt=""> | + | <img class="one" src="https://static.igem.org/mediawiki/2017/0/04/2017--Team_NEFU--home--IGEM.png" alt=""> |
| | <img class="two" src="https://static.igem.org/mediawiki/2017/2/23/2017--Team_NEFU--home--NEFU.png" alt=""> | | <img class="two" src="https://static.igem.org/mediawiki/2017/2/23/2017--Team_NEFU--home--NEFU.png" alt=""> |
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| | <li><a href="https://2017.igem.org/Team:NEFU_China/HP/Gold_Integrated" target="_blank">gold_integrated</a></li> | | <li><a href="https://2017.igem.org/Team:NEFU_China/HP/Gold_Integrated" target="_blank">gold_integrated</a></li> |
| | <li><a href="https://2017.igem.org/Team:NEFU_China/HP/Silver" target="_blank">silver</a></li> | | <li><a href="https://2017.igem.org/Team:NEFU_China/HP/Silver" target="_blank">silver</a></li> |
| − | <li><a href="https://2017.igem.org/Team:NEFU_China/Collaborations" target="_blank">collaboration</a></li>
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| − | </ul>
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| − | <li class="mainlevel" id="mainlevel_08"><a href="##">NOTEBOOK</a>
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| − | <ul id="sub_08">
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| − | <li><a href="https://2017.igem.org/Team:NEFU_China/Notebook" target="_blank">journal</a></li>
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| − | </ul>
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| − | <div class="clear"></div>
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| − | </ul>
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| − | </div>
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| − | <!--下拉菜单导航栏结束-->
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| − | <div class="all">
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| − | <div style="border:5px solid;width:17%;padding-left:18px;" class="biaoti1"><stong>LEADERS</stong></div>
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| − | <img style="width:15%;position:relative;top:120px;left:30%" src="images/result/j1.png" alt="">
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| − | <div id="A" class="biaoti">LEADER A</div>
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| − | <div class="text">
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| − | <p>In this part, we have deeply thought about the application of our project to the actual situation, and have carried on the thorough exchange with these practical problems and the different specialized direction teacher, summarized as follows:</p>
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| − | <p><strong>Bacteria strains:</strong><i>E. coli</i></p>
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| − | <p><strong>Function:</strong>Inducibly secretes serine to attract our followers in the system.</p>
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| − | <p><strong>Vector Construction:</strong>Gene fragments of serA, serB and serC were amplified via PCR and verified by electrophoresis (Fig. 1A). The theoretic gene size of serA is 1233 bp, serB is 969 bp, serC is 1089 bp, which matched our experimental results. The vector that expressed serA, serB and serC was showed in Fig. 1B.</p>
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| − | <img src="images/result/F1.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 1 Electrophoresis result of serA, serB, serC gene fragments
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| − | M, DL2000 marker</strong></p>
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| − | <p><strong>Functional Verification:</strong><br>
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| − | To demonstrate whether Leader A can secrete serine, we make serine detection experiment using serine detecting kit. The results found that the serine levels were significantly increased in Leader A group, as compared to the control group. Moreover, elevated expression levels of serine were observed in Leader A group with a time-dependent increase. These results indicate that Leader A can secrete serine successfully.
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| − | </p>
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| − | <img style="margin-left:calc(50% - 193px)" src="images/result/F2.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 2 Serine detection result of Leader A</strong></p><br><br>
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| − | <img style="width:15%;position:relative;top:120px;left:30%" src="images/result/j2.png" alt="">
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| − | <div id="B" class="biaoti">LEADER B</div>
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| − | <div class="text">
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| − | <p><strong>Bacteria strains:</strong><i>Corynebacterium glutamicum</i>(ATCC21885) purchased from the American Type Culture Collection. </p>
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| − | <img style="margin-left:calc(50% - 193px)" src="images/result/F3.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 3:It was dervided from wild type</strong></p>
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| − | <p><strong>Function: </strong>It was dervided from wild type and can produce leucine.</p>
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| − | </div>
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| − | <img style="width:15%;position:relative;top:120px;left:30%" src="images/result/j3.png" alt="">
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| − | <div id="C" class="biaoti">LEADER C</div>
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| − | <div class="text">
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| − | <p><strong>Bacteria strains:</strong><i>Starmerella Bombicola</i>purchased from the China Microbial Culture Collection.</p>
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| − | <img style="margin-left:calc(50% - 193px)" src="images/result/F4.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 4:It was dervided from wild type</strong></p>
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| − | <p><strong>Function: </strong>Metabolize fatty acids.</p>
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| − | <img style="width:50%;margin-left:calc(50% - 390px);position:relative;top:200px" src="images/result/q1.png" alt="">
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| − | <div id="CH" style="margin-left:calc(50% - 200px);margin-bottom: 140px" class="biaoti">CHEMOTAXIS</div>
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| − | <div class="text">
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| − | <p>Follower D & Follower E bacteria were tested. <br>
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| − | To confirm the system works successfully, we need to verify the theory whether those two kinds of bacteria “Follower D” and “Follower E” have the chemotaxis towards the serine or avoid high concentrations of leucine. Therefore, we made a device consists of needles and capillary tubes (made of medical plastic). <br>
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| − | First, to confirm the optimum chemotactic time of serine in this experiment, we put the capillary tubes into the bacterial suspension for 10, 30 and 60 min, respectively. The results found that the samples showed the best chemotactic effect at 30 min (Fig. A). Thus, this collected time point (30 min) is used for all subsequent experiments.</p>
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| − | <img style="width:100%" src="images/result/F5.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 5:It was dervided from wild type</strong></p>
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| − | <p>Second, we used each needle to absorb different concentrations of 0, 10<sup>-5</sup>, 10<sup>-4</sup>, 10<sup>-3</sup>, 10<sup>-2</sup> and 10<sup>-1</sup> M serine and the bacterial liquid were smeared in culture plate. As showed in Fig. 2, the number of monoclonal clonoly was increased as the concentration was elevated and reached a maximum at 10<sup>-1</sup> M (Fig. B). </p>
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| − | <img style="width:100%" src="images/result/F6.png" alt="">
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| − |
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| − | <p style="text-align: center;"><strong>Fig. 6:It was dervided from wild type</strong> </p>
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| − |
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| − | <p>To further confirm above result, the flow cytometry was used in this project. The number of bacteria was higher in serine group compared with the control group, gradually enhanced from 10<sup>-6</sup> to 10<sup>-1</sup> M as the concentration was increased and reached a maximum at 10<sup>-1</sup> M.</p>
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| − | <img style="width:100%" src="images/result/F7.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 7:It was dervided from wild type</strong> </p>
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| − |
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| − | <p>Next, we used leucine tubes instead of serine and then calculated the number of bacteria in capillaries for 30 min. </p>
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| − | <img style="width:100%" src="images/result/F7.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 7:It was dervided from wild type</strong> </p>
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| − | </div>
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| − | <img style="width:10%;margin-left:calc(50% - 480px);position:relative;top:140px" src="images/result/bt.png" alt="">
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| − | <div id="MI" style="margin-left:calc(50% - 300px);margin-bottom: 140px" class="biaoti">MICROORGANISM EMBEDDING</div>
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| − | <div class="text">
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| − | <p>To observe the lasting time and final effect of the whole system, we embed Leader A, Leader B and Leader C with sodium alginate and detect the variation of serine, leucine and fatty acid in the co-culture of Leader A, Leader B and Leader C (Fig. 1).</p>
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| − | <img style="width:100%" src="images/result/F9.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 9:It was dervided from wild type</strong></p>
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| − | <p>The results showed that we can detect the large amount of leucine from Leader B in medium and can also detect the depletion of Leader C to fatty acid. </p>
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| − | <img style="width:100%" src="images/result/F10.png" alt="">
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| − | <p style="text-align: center;"><strong>Fig. 10:Detected concentration of fatty acid in the medium of embedded sodium alginate pellets.</strong> </p>
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| − | </div>
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| − | <div class="guding">
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| − | <a href="#A">LEADER A</a>
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| − | <a href="#B">LEADER B</a>
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| − | <a href="#C">LEADER C</a>
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| − | <a href="#CH">CHEMOTAXIS</a>
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| − | <a href="#MI">IMMOBILIZATION</a>
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| − | </div>
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