Difference between revisions of "Team:BostonU HW/Demonstrate"

(Undo revision 346074 by Samperid (talk))
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<div class="main main-raised" id = "main_text">
 
<div class="main main-raised" id = "main_text">
 
<div class="container">
 
<div class="container">
<h1 class="text-center"> Explore the MARS Repository</h1>
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<h1 class="text-center"> The MARS Repository</h1>
 
<div class="text_section col-md-12">
 
<div class="text_section col-md-12">
 
<div class="text">
 
<div class="text">
When the team began designing the MARS Repository, we wanted to base it on the principles behind most complex synthetic biology protocols.
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<br>
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Microfluidic devices are often highly specific, performing entire specialized experiments on a chip. This means that these chips are not useful or relevant to an average member of the synthetic biology community.  
<br>
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                                <br>  
We began by generalizing synthetic biology protocols into three key stages:
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                                <br>
<ol>
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With this in mind, we set out to make the MARS repository. This repository would consist of generalized microfluidic chips that could be useful to any synthetic biologist.
<li>Isolation: Acquiring the desired genetic material</li>
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<br>  
<li>Modification: Manipulated or processing genetic material</li>
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                                <br>
<li>Quantification: Measuring the success of the previous two stages</li>
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To determine what protocols synbiologist would find useful on a microfluidic devices, we reached out the the Biological Design Center located at Boston University. This community of synthetic biologists gave us insight as to what what procedures are performed every day in the average synbio lab. We were able to identify eight protocols integral to synthetic biology: Cell Lysis, DNA Digestion, Ligation, Transformation, PCR, Fluorescence Testing, Antibiotic Resistance Testing, and Cell Culturing. These eight protocols, as well as Cell Sorting, make up the nine chips currently located in the MARS repository.
</ol>
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These stages “fit” together to form the entirety of the protocols that are carried out everyday in synthetic biology labs.
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<br>
 
<br>
 +
                                <br>
 +
Each of the nine chips located in the MARS repository are located within one of three subcategories: 
 +
                                <br>
 +
                                <br></div>
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<div class = "row" style="text-align: center">
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<img src="https://static.igem.org/mediawiki/2017/4/41/Isomodqua.png" >
 +
</div>
 
<br>
 
<br>
In the existing fields of microfluidics, each of these stages is taken care of on individual chips. However, when it comes time to replicate a full synbio procedure using these chips - it becomes difficult to “fit” them together realistically. This is due to the fact that most chips:
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                                <br><div class ="text">
 +
These nine chips, each performing a basic individual protocol, can be combined together to perform more complex synthetic biology experiments.  
 +
                                <br>
 +
                                <br>
 +
                                Each chip is fully documented, providing all the necessary files for replication and usage. These files include:
 +
                                </div>
 
<ol>
 
<ol>
<li>Fabrication using different and complicated techniques such as soft lithography</li>
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<b><li>Design Files</li></b>
<li>Operated using varying hardware</li>
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<b><li>Manufacturing Specifications and Instructions</li></b>
<li>Lack thorough documentation required to run them</li>
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<b><li>Usage and Testing protocols</li></b>
<li>Do not have easily accessible design files </li>
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</ol><div class = "text" style="margin-bottom:3%;">
</ol>
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As well as other useful tools and resources to make them as accessible as possible.
Furthermore, the majority of these chips are highly specialised to specific experimental protocols. As a result, they are not relevant in the context of day-to-day procedures in most synthetic biology labs.
+
 
<br>
 
<br>
 
<br>
 
<br>
After consultation with researchers at BU’s Biological Design Center, we were able to identify nine essential synthetic biology protocols and generalize them into these three categories. After confirming that this chip selection was relevant with an iGEM team poll, we moved on to designing and iterating on chips. The resulting design files, fabrication instructions and usage protocols are housed here - easily accessible to synbiologists and structured in a standardised workflow.
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These chips are currently in the water testing phase, but they provide a framework that can utilized and built upon by future iGEM teams and the synbio community to allow for biological testing and optimization.
 
</div>
 
</div>
</div>
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</div></div>
<div class="col-md-4">
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</div>
<div class="text_section row">
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<div class="main main-raised" style="margin-top:5%" id="chips" >
<h3 class="text-center"><u>Isolation</u></h3>
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<div class="container">
<div class="text">
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<h1 class="text-center"> Explore the MARS Repository</h1>
Lorem ipsum dolor sit amet, consectetur adipiscing elit. Integer volutpat, mi feugiat blandit feugiat, ante nisl dictum lacus, in egestas ligula nulla eu ex. Quisque vel justo congue, volutpat neque at, placerat nulla. Nam malesuada tellus sed justo pretium, eu vulputate mauris elementum. Donec elementum gravida ipsum id rhoncus.
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<div class = "text" style="text-align: center">Click on each chip's image to be directed to its specific page!</div>
</div>
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</div>
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</div>
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<div class="col-md-4">
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<div class="text_section row">
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<h3 class="text-center"><u>Modification</u></h3>
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<div class="text">
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Lorem ipsum dolor sit amet, consectetur adipiscing elit. Integer volutpat, mi feugiat blandit feugiat, ante nisl dictum lacus, in egestas ligula nulla eu ex. Quisque vel justo congue, volutpat neque at, placerat nulla. Nam malesuada tellus sed justo pretium, eu vulputate mauris elementum. Donec elementum gravida ipsum id rhoncus.
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</div>
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</div>
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</div>
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<div class="col-md-4">
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<div class="text_section row">
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<h3 class="text-center"><u>Quantification</u></h3>
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<div class="text">
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Lorem ipsum dolor sit amet, consectetur adipiscing elit. Integer volutpat, mi feugiat blandit feugiat, ante nisl dictum lacus, in egestas ligula nulla eu ex. Quisque vel justo congue, volutpat neque at, placerat nulla. Nam malesuada tellus sed justo pretium, eu vulputate mauris elementum. Donec elementum gravida ipsum id rhoncus.
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</div>
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</div>
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</div>
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</div>
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<div class="container">
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<div class="col-md-12">
 
<div class="col-md-12">
<div class="row">
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<div class="row" style="text-align: center" >
<h3><u>Isolation</u></h3>
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<h3><b>Isolation</b></h3>
 
<div class="column col-md-4">
 
<div class="column col-md-4">
 
<a href="https://2017.igem.org/Team:BostonU_HW/Lysis"><img src="https://static.igem.org/mediawiki/2017/0/09/MARS_Matrix_Lysis.png" alt="Picture"></a>
 
<a href="https://2017.igem.org/Team:BostonU_HW/Lysis"><img src="https://static.igem.org/mediawiki/2017/0/09/MARS_Matrix_Lysis.png" alt="Picture"></a>
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</div>
 
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<div class="row">
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<h3><u>Modification</u></h3>
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<h3><b><br>Modification</b></h3>
 
<div class="column col-md-4">
 
<div class="column col-md-4">
 
<a href="https://2017.igem.org/Team:BostonU_HW/Transformation"><img src="https://static.igem.org/mediawiki/2017/5/5b/MARS_Matrix_Trans.png" alt="Picture"></a>
 
<a href="https://2017.igem.org/Team:BostonU_HW/Transformation"><img src="https://static.igem.org/mediawiki/2017/5/5b/MARS_Matrix_Trans.png" alt="Picture"></a>
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</div>
 
</div>
 
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<h3><u>Quantification</u></h3>
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<h3><b><br>Quantification</b></h3>
 
<div class="column col-md-4" style="margin-bottom:3%;">
 
<div class="column col-md-4" style="margin-bottom:3%;">
 
<a href="https://2017.igem.org/Team:BostonU_HW/Antibiotic"><img src="https://static.igem.org/mediawiki/2017/c/cc/MARS_Matrix_AR.png" alt="Picture"></a>
 
<a href="https://2017.igem.org/Team:BostonU_HW/Antibiotic"><img src="https://static.igem.org/mediawiki/2017/c/cc/MARS_Matrix_AR.png" alt="Picture"></a>
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<div class="column col-md-4">
 
<div class="column col-md-4">
<a href="https://2017.igem.org/Team:BostonU_HW/Culturing"><img src="https://static.igem.org/mediawiki/2017/f/fb/MARS_Matrix_CC.png" alt="Picture"></a>
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<a href="https://2017.igem.org/Team:BostonU_HW/Culturing "><img src="https://static.igem.org/mediawiki/2017/f/fb/MARS_Matrix_CC.png" alt="Picture"></a>
 
<h4 class="text-center">Cell Culturing</h4>
 
<h4 class="text-center">Cell Culturing</h4>
 
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    <div class="col-md-2" style="color:white; margin-bottom:30px; margin-top:5px;">
 
      <h3>CONTACT US</h3>
 
    <div style="text-align:center;">
 
      <a href="mailto:igembuhw@gmail.com">
 
      <img src="https://static.igem.org/mediawiki/2017/7/74/MARS_WHITEEmail.png" style="height:60px; margin-top:20px;">
 
      </a>
 
        <a href="https://www.instagram.com/buigemhardware/?hl=en">
 
        <img src="https://static.igem.org/mediawiki/2017/9/93/MARS_Final_insta.png" style="height:60px; margin-top:20px;">
 
      </a>
 
          <a href="https://twitter.com/igemhwbu">
 
          <img src="https://static.igem.org/mediawiki/2017/b/b6/MARS_Twitter_White.png" style="height:60px; margin-top:20px;">
 
          </a>
 
      </div>
 
      </div>
 
      <div class="col-md-10" style="margin-bottom:30px;">
 
        <img src="https://static.igem.org/mediawiki/2017/0/0e/MARS_SponsorsFinal.png" style="width:100%; margin-top:30px;" usemap="#image-map">
 
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Revision as of 20:05, 30 October 2017

BostonU_HW

Repository

The MARS Repository

Microfluidic devices are often highly specific, performing entire specialized experiments on a chip. This means that these chips are not useful or relevant to an average member of the synthetic biology community.

With this in mind, we set out to make the MARS repository. This repository would consist of generalized microfluidic chips that could be useful to any synthetic biologist.

To determine what protocols synbiologist would find useful on a microfluidic devices, we reached out the the Biological Design Center located at Boston University. This community of synthetic biologists gave us insight as to what what procedures are performed every day in the average synbio lab. We were able to identify eight protocols integral to synthetic biology: Cell Lysis, DNA Digestion, Ligation, Transformation, PCR, Fluorescence Testing, Antibiotic Resistance Testing, and Cell Culturing. These eight protocols, as well as Cell Sorting, make up the nine chips currently located in the MARS repository.

Each of the nine chips located in the MARS repository are located within one of three subcategories:



These nine chips, each performing a basic individual protocol, can be combined together to perform more complex synthetic biology experiments.

Each chip is fully documented, providing all the necessary files for replication and usage. These files include:
  1. Design Files
  2. Manufacturing Specifications and Instructions
  3. Usage and Testing protocols
As well as other useful tools and resources to make them as accessible as possible.

These chips are currently in the water testing phase, but they provide a framework that can utilized and built upon by future iGEM teams and the synbio community to allow for biological testing and optimization.

Explore the MARS Repository

Click on each chip's image to be directed to its specific page!

Isolation

Picture

Cellular Lysis

Picture

DNA Digestion

Picture

Cell Sorting


Modification

Picture

Transformation

Picture

PCR

Picture

Ligation


Quantification

Picture

Antibiotic Resistance

Picture

Fluorescence

Picture

Cell Culturing