Difference between revisions of "Team:Austin UTexas LASA/Results"

 
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<b>Overview</b>
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<p>&nbsp;&nbsp;&nbsp;- Assembled and sequence verified Venus cassette plasmid and pp2551 cassette plasmid <br/>
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&nbsp;&nbsp;&nbsp; - Assembled the multigene sensing assembly <br/>
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&nbsp;&nbsp;&nbsp; - Tested another version of the sensing assembly and demonstrated that it works </P>
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<h5>What should this page contain?</h5>
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<b>Production Circuit</b><br/>
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<p>Our team did not have an assay to get quantitative measurements concerning the production of L-DOPA in our production assembly. However, by itself, L-DOPA will oxidize to melanin. As a result, to get qualitative results concerning our production assembly, we grew up our production cells in LB media containing 5 mM tyrosine and 0 mM tyrosine and then observed if a color change occurred. The diagram above shows such a color change. Our production assembly did observe a similar color change, but the change in color was not very pronounced. </p>
<li> Clearly and objectively describe the results of your work.</li>
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<li> Future plans for the project. </li>
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<li> Considerations for replicating the experiments. </li>
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<h5>You should also describe what your results mean: </h5>
 
  
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<b>Sensing Circuit</b><br/>
<li> Interpretation of the results obtained during your project. Don't just show a plot/figure/graph/other, tell us what you think the data means. This is an important part of your project that the judges will look for. </li>
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<p>We tested a sensing construct that was similar to our sensing construct in design but built with different methods and parts. Instead of Venus fluorescence protein, this sensing circuit expressed e2-crimson, and was inserted into a pMMB67EH vector, while in our sensing construct, the Venus gene was inserted into a pET28 vector. Both constructs were transformed into Top 10 E. Coli strain and used in the fluorescence detection assay. We found that the fluorescence intensity in the cell increased as the amount of L-DOPA in the media increased for the lab construct. However, we found that our sensing construct, in the presence of L-DOPA, showed increased expression of fluorescence when certain amounts of L-DOPA were present in the media. You can see a slight increase in fluorescence from no L-DOPA to 100 uM of L-DOPA. However, the data shows that a lower level of fluorescence was detected when 1 mM of L-DOPA was present, which is different than the predicted outcome. These data suggest that different combination of vector plasmid and E. coli strain might have a different effect on the inducibility of sensing construct. Therefore, further study is needed to find out the best combination of vector and E.coli strain for this sensing construct.
<li> Show data, but remember all measurement and characterization data must be on part pages in the Registry. </li>
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<li> Consider including an analysis summary section to discuss what your results mean. Judges like to read what you think your data means, beyond all the data you have acquired during your project. </li>
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Fig. 1. A chart showing the detected level of fluorescence (E2-Crimson) expressed by a sensing cell in different conditions of L-DOPA in the media.
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Fig. 2. A chart showing the detected level of fluorescence (Venus) expressed by a sensing cell in different conditions of L-DOPA in the media.
  
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<h5> Project Achievements </h5>
 
 
<p>You can also include a list of bullet points (and links) of the successes and failures you have had over your summer. It is a quick reference page for the judges to see what you achieved during your summer.</p>
 
 
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<li>A list of linked bullet points of the successful results during your project</li>
 
<li>A list of linked bullet points of the unsuccessful results during your project. This is about being scientifically honest. If you worked on an area for a long time with no success, tell us so we know where you put your effort.</li>
 
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<h5>Inspiration</h5>
 
<p>See how other teams presented their results.</p>
 
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<li><a href="https://2014.igem.org/Team:TU_Darmstadt/Results/Pathway">2014 TU Darmstadt </a></li>
 
<li><a href="https://2014.igem.org/Team:Imperial/Results">2014 Imperial </a></li>
 
<li><a href="https://2014.igem.org/Team:Paris_Bettencourt/Results">2014 Paris Bettencourt </a></li>
 
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Latest revision as of 04:56, 16 December 2017


Results

Overview

   - Assembled and sequence verified Venus cassette plasmid and pp2551 cassette plasmid
    - Assembled the multigene sensing assembly
    - Tested another version of the sensing assembly and demonstrated that it works



Production Circuit

Our team did not have an assay to get quantitative measurements concerning the production of L-DOPA in our production assembly. However, by itself, L-DOPA will oxidize to melanin. As a result, to get qualitative results concerning our production assembly, we grew up our production cells in LB media containing 5 mM tyrosine and 0 mM tyrosine and then observed if a color change occurred. The diagram above shows such a color change. Our production assembly did observe a similar color change, but the change in color was not very pronounced.

Sensing Circuit

We tested a sensing construct that was similar to our sensing construct in design but built with different methods and parts. Instead of Venus fluorescence protein, this sensing circuit expressed e2-crimson, and was inserted into a pMMB67EH vector, while in our sensing construct, the Venus gene was inserted into a pET28 vector. Both constructs were transformed into Top 10 E. Coli strain and used in the fluorescence detection assay. We found that the fluorescence intensity in the cell increased as the amount of L-DOPA in the media increased for the lab construct. However, we found that our sensing construct, in the presence of L-DOPA, showed increased expression of fluorescence when certain amounts of L-DOPA were present in the media. You can see a slight increase in fluorescence from no L-DOPA to 100 uM of L-DOPA. However, the data shows that a lower level of fluorescence was detected when 1 mM of L-DOPA was present, which is different than the predicted outcome. These data suggest that different combination of vector plasmid and E. coli strain might have a different effect on the inducibility of sensing construct. Therefore, further study is needed to find out the best combination of vector and E.coli strain for this sensing construct.


Fig. 1. A chart showing the detected level of fluorescence (E2-Crimson) expressed by a sensing cell in different conditions of L-DOPA in the media.

Fig. 2. A chart showing the detected level of fluorescence (Venus) expressed by a sensing cell in different conditions of L-DOPA in the media.











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