Difference between revisions of "Team:HZAU-China/InterLab"

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<h1>InterLab</h1>
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<h3>Bronze Medal Criterion #4</h3>
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<p><b>Standard Tracks:</b> Participate in the Interlab Measurement Study and/or improve the characterization of an existing BioBrick Part or Device and enter this information on that part's Main Page in the Registry. The part that you are characterizing must NOT be from a 2017 part number range.
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<br><br>
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For teams participating in the <a href="https://2017.igem.org/Competition/InterLab_Study">InterLab study</a>, all work must be shown on this page.
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  <div class="HZAU_2017_menu">
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    <img src="https://static.igem.org/mediawiki/2017/8/8e/HZAU_2017_background_1.png" class="beijin">
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        <a href="#" id="bianse_1">default</a>
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        <a href="#item2_1" id="bianse_2">default</a>
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  <div class="HZAU_content">
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    <div class="HZAU_item">
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      <a class="biaoti">Interlab</a>
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      <a class="zhengwen">This year the HZAU-China iGEM team participated in the interlab held by iGEM official. The determination of this year
 +
        is to obtain the transcription strength of a series parts by measuring fluorescence of these parts in DH5a E. coli.
 +
        Compared with the last year, this year we need to measure eight parts altogether, and this experiment not only provides
 +
        valuable data for the development of synthetic biology but also is a treasure experience for our lab.</a>
 +
      <a class="fubiaoti">Protocol & Results</a>
 +
      <a class="zhengwen">All experiments conducted are under the guidance of official protocol. After experiments, we filled in form and sent
 +
        back the result to measurement at iGEM dot org intime. The detail results are as following.</a>
 +
      <a class="fubiaoti">the measurement of 校准因子</a>
 +
      <a class="zhengwen">The first step of this year is to know the transformation efficiency of our plate reader, because we need to transform
 +
        our relative quantification into absolute quantification.</a>
 +
      <a class="zhengwen">The procedure is as following. Add 100 uL of LUDOX solution into 3 wells of 96-well-plate and add 100 uL of 灭菌water
 +
        into another 3 wells of 96-well-plate. Measuring the OD 600 by using Bio-Tek Synergy 2 plate reader.</a>
 +
      <a class="fubiaoti">Standard fluorescence measurement</a>
 +
      <a class="zhengwen">To make our data feasible to be compared with data from other teams, we also measured the standard curve of fluorescence.</a>
 +
      <a class="zhengwen">The procedure is as following. The supplied fluorescence powder are all suspended into 1mL PBS to final concentration
 +
        as 50uM, then series diluted into gradient concentration as 25uM, 12.5uM, 6.25uM,3.125uM until 50*2^-8 uM. By using
 +
        plate reader, a standard curve of fluorescence is obtained.</a>
 +
      <img src="https://i0.hdslb.com/bfs/bangumi/71ff7c74c34eeac1c12379c40126d200233780dd.jpg_144x144.jpg" class="tu_1">
 +
      <a class="zhengwen">after communication with other teams, we attempted to preculture luciferase at 42°C for 4 hour to get a more stabilize
 +
        result, the result is as following</a>
 +
      <img src="https://i0.hdslb.com/bfs/bangumi/71ff7c74c34eeac1c12379c40126d200233780dd.jpg_144x144.jpg" class="tu_1">
 +
      <a class="zhengwen">Compared with previous results, the latter experiment shows a more reliable data so the latter one is used to the following
 +
        experiment.
 +
      </a>
 +
      <a class="fubiaoti">Cell measurement</a>
 +
      <a class="zhengwen">At last we need to measure the promoter strength of supplied 8 parts. The OD 600 and fluorescence strength is obtained
 +
        at the same time to get data of mean fluorescence per cell.</a>
 +
      <a class="zhengwen">The tested parts are as following:</a>
 +
      <ul>
 +
        <li>Positive Control (BBa_I20270)</li>
 +
        <li>Negative Control (BBa_R0040)</li>
 +
        <li>Test Device 1 (BBa_J364000)</li>
 +
        <li>Test Device 2 (BBa_J364001)</li>
 +
        <li>Test Device 3 (BBa_J364002)</li>
 +
        <li>Test Device 4 (BBa_J364003)</li>
 +
        <li>Test Device 5 (BBa_J364004)</li>
 +
        <li>Test Device 6 (BBa_J364005)</li>
 +
      </ul>
 +
      <a class="zhengwen">The experiment procedure is as following. First, the plasmid obtained from 2017 iGEM distribution is transformed into
 +
        commercial chemical competent cell of DH5a E. coli. After overnight culture, pick two single colony from the plate
 +
        into 50ml falcon tube culture containing LB with 50ug/mL 氨苄 overnight. Dilute two culture into OD= 0.01 and inject
 +
        100uL diluted culture into 96-well-plate. After measured the initiation fluorescence and OD600, the plate is cultured
 +
        in the shaker摇床 and measured the fluorescence strength and OD600 every 2 hours to get our final data.</a>
 +
      <img src="https://i0.hdslb.com/bfs/bangumi/71ff7c74c34eeac1c12379c40126d200233780dd.jpg_144x144.jpg" class="tu_1">
 +
      <a class="zhengwen">The result is approximately coincide with the data online, but some high expression parts, like device 1, showed a lower growth rate than expected. We suspected that it is the overexpression that influence the growth of bacteria.</a>
 +
      <a class="zhengwen">For more detailed data about our experiment, please feel free to download the following file.</a>
 +
      <a class="fubiaoti">Suggestion for further interlab project</a>
 +
      <a class="zhengwen">During our experiment, we find that the recommended absorption and emission wavelength, 501~511nm, is not suitable
 +
        for our plate reader leading to a data overflow, so we recommend to a wider range, 485~528nm, to acquire data.</a>
 +
    </div>
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  </div>
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Revision as of 14:20, 29 October 2017

Interlab This year the HZAU-China iGEM team participated in the interlab held by iGEM official. The determination of this year is to obtain the transcription strength of a series parts by measuring fluorescence of these parts in DH5a E. coli. Compared with the last year, this year we need to measure eight parts altogether, and this experiment not only provides valuable data for the development of synthetic biology but also is a treasure experience for our lab. Protocol & Results All experiments conducted are under the guidance of official protocol. After experiments, we filled in form and sent back the result to measurement at iGEM dot org intime. The detail results are as following. the measurement of 校准因子 The first step of this year is to know the transformation efficiency of our plate reader, because we need to transform our relative quantification into absolute quantification. The procedure is as following. Add 100 uL of LUDOX solution into 3 wells of 96-well-plate and add 100 uL of 灭菌water into another 3 wells of 96-well-plate. Measuring the OD 600 by using Bio-Tek Synergy 2 plate reader. Standard fluorescence measurement To make our data feasible to be compared with data from other teams, we also measured the standard curve of fluorescence. The procedure is as following. The supplied fluorescence powder are all suspended into 1mL PBS to final concentration as 50uM, then series diluted into gradient concentration as 25uM, 12.5uM, 6.25uM,3.125uM until 50*2^-8 uM. By using plate reader, a standard curve of fluorescence is obtained. after communication with other teams, we attempted to preculture luciferase at 42°C for 4 hour to get a more stabilize result, the result is as following Compared with previous results, the latter experiment shows a more reliable data so the latter one is used to the following experiment. Cell measurement At last we need to measure the promoter strength of supplied 8 parts. The OD 600 and fluorescence strength is obtained at the same time to get data of mean fluorescence per cell. The tested parts are as following:
  • Positive Control (BBa_I20270)
  • Negative Control (BBa_R0040)
  • Test Device 1 (BBa_J364000)
  • Test Device 2 (BBa_J364001)
  • Test Device 3 (BBa_J364002)
  • Test Device 4 (BBa_J364003)
  • Test Device 5 (BBa_J364004)
  • Test Device 6 (BBa_J364005)
The experiment procedure is as following. First, the plasmid obtained from 2017 iGEM distribution is transformed into commercial chemical competent cell of DH5a E. coli. After overnight culture, pick two single colony from the plate into 50ml falcon tube culture containing LB with 50ug/mL 氨苄 overnight. Dilute two culture into OD= 0.01 and inject 100uL diluted culture into 96-well-plate. After measured the initiation fluorescence and OD600, the plate is cultured in the shaker摇床 and measured the fluorescence strength and OD600 every 2 hours to get our final data. The result is approximately coincide with the data online, but some high expression parts, like device 1, showed a lower growth rate than expected. We suspected that it is the overexpression that influence the growth of bacteria. For more detailed data about our experiment, please feel free to download the following file. Suggestion for further interlab project During our experiment, we find that the recommended absorption and emission wavelength, 501~511nm, is not suitable for our plate reader leading to a data overflow, so we recommend to a wider range, 485~528nm, to acquire data.