Difference between revisions of "Team:NAWI Graz/Results"

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     <h2 class="section-sub">pH-Sensing</h2>
 
     <h2 class="section-sub">pH-Sensing</h2>
 
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         <p>To test if our pH sensitive constructs express the fluorescence proteins we cultivated the bacteria hosting the plasmids
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         <p>To test if our pH sensitive constructs express the fluorescence proteins, we cultivated the bacteria hosting the plasmids in LPM with pH 7 overnight. For expression control of our alx-mNeonGreen construct, we inoculated 20 ml LPM with pH 7.0, 8.0 and 8.5 to an OD<sub>600</sub> of 0.2 using the overnight culture. After 20 and 40 minutes 1ml of each culture was taken and adjusted to the lowest OD<sub>600</sub> of the three samples to standardize the OD<sub>600</sub>. This was necessary as growth at pH 8.0 and 8.5 was significant slower than at pH 7.0. The diluted samples were used to measure fluorescence (excitation 490 nm, emission 520 nm) and again OD<sub>600</sub> with our plate reader. Three aliquots of each sample were measured (n=3), fluorescence was divided by OD<sub>600</sub> and averages of the three aliquots were taken to obtain the data shown in Figure 1.</p>
            in LPM with pH 7 overnight. For expression control for our alx-mNeonGreen construct, we inoculated 20 ml LPM
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            with pH 7.0, 8.0 and 8.5 to an OD<sub>600</sub> of 0.2 using the overnight culture. After 20 and 40 minutes 1 ml of each culture where taken and adjusted
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            to the lowest OD<sub>600</sub> of the three samples to standardize OD<sub>600</sub>. This was necessary growth at pH 8.0 and 8.5 was significant slower than at pH 7.0. This diluted samples
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            where used to measure fluorescence (extinction 490 nm, absorbance 520 nm) and again OD<sub>600</sub> with our plate reader. Three aliquots of each sample where measured (n=3), fluorescence was divided
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            by OD<sub>600</sub> and average of the three aliquots where taken to obtain the data shown in Figure 3.</p>
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             <b>Fig 1.</b> alx-promotor controlled mNeonGreen expression: Culture media was bufferd to pH 7, 8 and 8.5 and inoculated
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             <b>Fig 1. Alx controlled mNeonGreen Expression:</b> Culture media was buffered to pH 7, 8 and 8.5 and inoculated to an OD<sub>600</sub> of 0.2. After 20 and 40 minutes, aliquots were taken and fluorescence (extinction 490 nm, absorbance 520 nm) and OD<sub>600</sub> were measured with the plate reader (n=3).
            to an OD<sub>600</sub> of 0.2. After 20 and 40 minutes, aliquotes where taken and fluorescence (extinction 490 nm, absorbance
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            520 nm) and OD<sub>600</sub> were measured with the plate reader (n=3).</font>
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            As shown in figure 1. Expression of mNeonGreen is increased at pH 8 and 8.5 compared to standard pH 7. Cultures
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          As shown in Fig. 1 fluorescence increases at pH 8.0 and 8.5 at both times compared to a standard culture at pH 7.0. At pH 7.0 cultures still show high fluorescence values with no difference between cultures with our plasmid or cultures without any DNA coding for mNeonGreen (Data not shown). This leads to the conclusion that bacteria on their own emit at ~520 nm when stimulated at 490 nm. Still fluorescence is significantly increased in all cultures at higher pH with a maximum of fluorescence at pH 8.5 after 20 min. This increase in fluorescence allows to distinguish between induced and uninduced. Hence we could show that our <a href="https://2017.igem.org/Team:NAWI_Graz/https://2017.igem.org/Team:NAWI_Graz/pHPlasmid#alx">construct</a> works as planned. The next step would be to test how much base (NaOH) would be needed to change the pH of a defined volume of culture with pH 7.0 to pH 8.5. This data would enable us to use the construct to control the robot. Unfortunately the summer was to short to complete this task.
            at pH 7, but also cultures without the mNeonGreen plasmid (data not shown) show a high basic fluorescence, leading
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            to the conclusion that the cells naturally show emission at 520 nm. Still, fluorescence is increased twofold at pH
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            8.5 after 20 and 40 minutes and fluorescence is significantly increased at pH 8 at both measuring points
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Revision as of 21:48, 1 November 2017

RESULTS

pH-Sensing

To test if our pH sensitive constructs express the fluorescence proteins, we cultivated the bacteria hosting the plasmids in LPM with pH 7 overnight. For expression control of our alx-mNeonGreen construct, we inoculated 20 ml LPM with pH 7.0, 8.0 and 8.5 to an OD600 of 0.2 using the overnight culture. After 20 and 40 minutes 1ml of each culture was taken and adjusted to the lowest OD600 of the three samples to standardize the OD600. This was necessary as growth at pH 8.0 and 8.5 was significant slower than at pH 7.0. The diluted samples were used to measure fluorescence (excitation 490 nm, emission 520 nm) and again OD600 with our plate reader. Three aliquots of each sample were measured (n=3), fluorescence was divided by OD600 and averages of the three aliquots were taken to obtain the data shown in Figure 1.

[Diagramm_alx.xlsx]
Fig 1. Alx controlled mNeonGreen Expression: Culture media was buffered to pH 7, 8 and 8.5 and inoculated to an OD600 of 0.2. After 20 and 40 minutes, aliquots were taken and fluorescence (extinction 490 nm, absorbance 520 nm) and OD600 were measured with the plate reader (n=3).
As shown in Fig. 1 fluorescence increases at pH 8.0 and 8.5 at both times compared to a standard culture at pH 7.0. At pH 7.0 cultures still show high fluorescence values with no difference between cultures with our plasmid or cultures without any DNA coding for mNeonGreen (Data not shown). This leads to the conclusion that bacteria on their own emit at ~520 nm when stimulated at 490 nm. Still fluorescence is significantly increased in all cultures at higher pH with a maximum of fluorescence at pH 8.5 after 20 min. This increase in fluorescence allows to distinguish between induced and uninduced. Hence we could show that our construct works as planned. The next step would be to test how much base (NaOH) would be needed to change the pH of a defined volume of culture with pH 7.0 to pH 8.5. This data would enable us to use the construct to control the robot. Unfortunately the summer was to short to complete this task.