Difference between revisions of "Team:Edinburgh OG/Improve"

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<h1>Improve</h1>
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<h1 align="center">Improve</h1>
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<h1>INTRODUCTION</h1>
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<h2>INTRODUCTION</h2>
  
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<p>A core principle of the Biobrick foundation is to bring standardisation in a field that is constantly changing and evolving. Standardising biological parts and their assembly allows for projects to focus less on assembly of genetic constructs and more on design and testing. ####
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<p>A core principle of the Biobrick foundation is to bring standardisation in a field that is constantly changing and evolving. Standardising biological parts and their assembly allows for projects to focus less on assembly of genetic constructs and more
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</p>
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on design and testing.
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</p>
  
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<p>LovTAP is a DNA binding fusion protein between a Light-oxygen-voltage-sensing (LOV2) domain from Avena sativa and tryptophan repressor (TrpR) common in E. coli developed and improved in 2008[1],[2]. The LovTAP fusion protein was initially submitted to the registry by the École Polytechnique Fédérale de Lausanne 2009 iGEM team[3].
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<p>LovTAP is a DNA binding fusion protein between a Light-oxygen-voltage-sensing (LOV2) domain from Avena sativa and tryptophan repressor (TrpR) common in E. coli developed and improved in 2008[1],[2]. The LovTAP fusion protein was initially submitted to
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The LovTAP fusion protein acts as a photoswitch allowing selective DNA binding through the TrpR domain regulated by the asLOV2 domain. The asLOV2 domain sensitive to photoexitation at 470 nm exists in two conformational; a dark state and light state. Photoexcitation at 470 nm of the LOV domain results in the conformational change of the trpR domain allowing DNA binding, DNA disassociation occurs when the LOV domain returns to the inactive dark state causing the conformation to revert.  
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the registry by the École Polytechnique Fédérale de Lausanne 2009 iGEM team[3]. The LovTAP fusion protein acts as a photoswitch allowing selective DNA binding through the TrpR domain regulated by the asLOV2 domain. The asLOV2 domain sensitive to photoexitation
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</p>
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at 470 nm exists in two conformational; a dark state and light state. Photoexcitation at 470 nm of the LOV domain results in the conformational change of the trpR domain allowing DNA binding, DNA disassociation occurs when the LOV domain returns to
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<img src="https://static.igem.org/mediawiki/2017/b/bf/ED_OD_Lovtap_strickland.png" height="600" width="600">
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the inactive dark state causing the conformation to revert.
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<img src="https://static.igem.org/mediawiki/2017/6/64/ED_OD_Lovtap_strickland2.png" height="450" width="450">
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<img src="https://static.igem.org/mediawiki/2017/b/bf/ED_OD_Lovtap_strickland.png" height="600" width="600">
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<img src="https://static.igem.org/mediawiki/2017/6/64/ED_OD_Lovtap_strickland2.png" height="450" width="450">
  
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<h1>IMPROVEMENTS</h1>
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<h2>IMPROVEMENTS</h2>
  
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<p>The original Biobrick <a href=http://parts.igem.org/wiki/index.php?title=Part:BBa_K191006> BBa_K191006</a> is only compatible with a single assembly method (RFC 21), limiting availability on the registry and hence hindering further future work. Redesigning of the original brick and optimising the coding sequence for the iGEM registry would result in extended compatibility, facilitating future work and characterisation.  
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<p>The original Biobrick <a href=http://parts.igem.org/wiki/index.php?title=Part:BBa_K191006> BBa_K191006</a> is only compatible with a single assembly method (RFC 21), limiting availability on the registry and hence hindering further future work. Redesigning
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</p>
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of the original brick and optimising the coding sequence for the iGEM registry would result in extended compatibility, facilitating future work and characterisation.
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<p>
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<h1>REFERENCES</h1>
 
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<p>[1] Strickland, D. et al. ‘Rationally Improving LOV Domain–based Photoswitches’. Nat. Methods 7, 623–626 (2010).
 
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</p>
 
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<p>[2] Strickland, D., Moffat, K. & Sosnick, T. R. ‘Light-Activated DNA Binding in a Designed Allosteric Protein.’ Proc. Natl. Acad. Sci. U. S. A. 105, 10709–14 (2008).
 
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</p>
 
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<p>[3] ‘Team:EPF-Lausanne/LOVTAP - 2009.igem.org’. Available at: https://2009.igem.org/Team:EPF-Lausanne/LOVTAP.
 
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</p>
 
  
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<div class="div-ref">
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<p>[1] Strickland, D. et al. ‘Rationally Improving LOV Domain–based Photoswitches’. Nat. Methods 7, 623–626 (2010).
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</p>
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<p>[2] Strickland, D., Moffat, K. & Sosnick, T. R. ‘Light-Activated DNA Binding in a Designed Allosteric Protein.’ Proc. Natl. Acad. Sci. U. S. A. 105, 10709–14 (2008).
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</p>
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<p>[3] ‘Team:EPF-Lausanne/LOVTAP - 2009.igem.org’. Available at: https://2009.igem.org/Team:EPF-Lausanne/LOVTAP.
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</p>
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</div>
 
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Revision as of 01:52, 2 November 2017

PhagED: a molecular toolkit to re-sensitise ESKAPE pathogens

Improve

INTRODUCTION

A core principle of the Biobrick foundation is to bring standardisation in a field that is constantly changing and evolving. Standardising biological parts and their assembly allows for projects to focus less on assembly of genetic constructs and more on design and testing.

LovTAP is a DNA binding fusion protein between a Light-oxygen-voltage-sensing (LOV2) domain from Avena sativa and tryptophan repressor (TrpR) common in E. coli developed and improved in 2008[1],[2]. The LovTAP fusion protein was initially submitted to the registry by the École Polytechnique Fédérale de Lausanne 2009 iGEM team[3]. The LovTAP fusion protein acts as a photoswitch allowing selective DNA binding through the TrpR domain regulated by the asLOV2 domain. The asLOV2 domain sensitive to photoexitation at 470 nm exists in two conformational; a dark state and light state. Photoexcitation at 470 nm of the LOV domain results in the conformational change of the trpR domain allowing DNA binding, DNA disassociation occurs when the LOV domain returns to the inactive dark state causing the conformation to revert.

IMPROVEMENTS

The original Biobrick BBa_K191006 is only compatible with a single assembly method (RFC 21), limiting availability on the registry and hence hindering further future work. Redesigning of the original brick and optimising the coding sequence for the iGEM registry would result in extended compatibility, facilitating future work and characterisation.

[1] Strickland, D. et al. ‘Rationally Improving LOV Domain–based Photoswitches’. Nat. Methods 7, 623–626 (2010).

[2] Strickland, D., Moffat, K. & Sosnick, T. R. ‘Light-Activated DNA Binding in a Designed Allosteric Protein.’ Proc. Natl. Acad. Sci. U. S. A. 105, 10709–14 (2008).

[3] ‘Team:EPF-Lausanne/LOVTAP - 2009.igem.org’. Available at: https://2009.igem.org/Team:EPF-Lausanne/LOVTAP.