Difference between revisions of "Team:NAWI Graz/Safety"

Line 14: Line 14:
 
             organized a training for all team members including fire drill and evacuation, how to behave in case of an accident
 
             organized a training for all team members including fire drill and evacuation, how to behave in case of an accident
 
             and how to render first aid. This safety training was also about good laboratory practice – correct waste disposal
 
             and how to render first aid. This safety training was also about good laboratory practice – correct waste disposal
             and clean and decent laboratory work. To fulfill a good laboratory practice, everyone had to wear lab coats,
+
             and clean and decent laboratory work. To establish a good laboratory practice, everyone had to wear lab coats,
 
             safety glasses and gloves. In addition to this lab safety training, we further had a safety seminar where all
 
             safety glasses and gloves. In addition to this lab safety training, we further had a safety seminar where all
 
             people who worked at the institute participated. There we got used to all institute related safety questions.
 
             people who worked at the institute participated. There we got used to all institute related safety questions.
             Both safety seminars took place before starting with the lab work. Every lab work was carried out within the
+
             Both safety seminars took place before starting with the lab work. The lab work was carried out within the
 
             biosafety guidelines established by the Technical University of Graz. Due to our project, we took part at a skype
 
             biosafety guidelines established by the Technical University of Graz. Due to our project, we took part at a skype
 
             conference about safety organized by the University of Uppsala. <a href="https://2017.igem.org/Team:NAWI_Graz/Collaborations">Five teams</a>
 
             conference about safety organized by the University of Uppsala. <a href="https://2017.igem.org/Team:NAWI_Graz/Collaborations">Five teams</a>
             from all over Europe participated at the conference .  The discussion was about general safety in lab as well
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             from all over Europe participated at the conference .  The discussion was about general safety in the lab as well
             as the potential risk of the designed constructs and what might happen if they are released. One of the questions
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             as the  the potential risk of the designed constructs and what might happen, if they are released. One of the questions
             was if we could anticipate how our GEM (Genetically Engineered Machine) would behave if released. We came to
+
             was if we could anticipate how our GEM (Genetically Engineered Machine) would behave, if released. We came to
             the conclusion, that there are no major security vulnerabilities, since we planned our construct according to
+
             the conclusion that there are no major security vulnerabilities, since we planned our construct according to
 
             the iGEM safety guidelines. Aside from the safety precautions for the construct, we only used lab strains with
 
             the iGEM safety guidelines. Aside from the safety precautions for the construct, we only used lab strains with
 
             deficiencies such as BL21, XL1-blue, TOP10 or DH5a. Lab strain deficiencies are a selection disadvantage, like
 
             deficiencies such as BL21, XL1-blue, TOP10 or DH5a. Lab strain deficiencies are a selection disadvantage, like
             lower fitness or lower survivability. On the other hand, the DNA is beneficial for more fit bacteria if transferred.
+
             lower fitness or lower survivability. On the other hand, the DNA is beneficial for fitter bacteria if transferred.
 
             However, we took arrangements to prevent the uncontrolled release, especially the working steps of our student
 
             However, we took arrangements to prevent the uncontrolled release, especially the working steps of our student
             team members have been carefully examined. Here we took special attention that all the work was performed regarding
+
             team members had been carefully examined. Here we paid special attention that all the work was performed with regards to
 
             the lab safety regulations. If you are interested in more details, you can check out the video <a href="https://www.youtube.com/watch?v=TOuFtJZxDf0" target="_blank">here.</a>
 
             the lab safety regulations. If you are interested in more details, you can check out the video <a href="https://www.youtube.com/watch?v=TOuFtJZxDf0" target="_blank">here.</a>
  
Line 40: Line 40:
 
             For our project we used <i>E. coli</i> BL21, XL1-blue and TOP10 strains. These common lab strains provide no risk for the general
 
             For our project we used <i>E. coli</i> BL21, XL1-blue and TOP10 strains. These common lab strains provide no risk for the general
 
             public. The antibiotic resistances we used were spectinomycin, kanamycin and chloramphenicol. These are common
 
             public. The antibiotic resistances we used were spectinomycin, kanamycin and chloramphenicol. These are common
             markers that have been used for many years in molecular biology practice regarded as safe. Their use in medicine
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             markers that have been used for many years in molecular biology practice and are regarded as safe. Their use in medicine
             is not relevant anymore since they have been substituted by more efficient and safe antibiotics with less side
+
             is not relevant anymore, since they have been substituted by more efficient and safe antibiotics with less side
 
             effects. Horizontal gene transfer, HGT, could lead to some problems, but that concerns all iGEM teams and synthetic
 
             effects. Horizontal gene transfer, HGT, could lead to some problems, but that concerns all iGEM teams and synthetic
 
             biology projects and is not unique to our work. In our case, we used fluorescence proteins and we cannot imagine
 
             biology projects and is not unique to our work. In our case, we used fluorescence proteins and we cannot imagine
             a scenario in which fluorescence proteins help bacteria to survive or provide a selective advantage. Therefore,
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             a scenario, in which fluorescence proteins help bacteria to survive or provide a selective advantage. Therefore,
 
             HGT is not a high risk.
 
             HGT is not a high risk.
 
         </div>
 
         </div>
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         <div class="section-text container">
 
         <div class="section-text container">
 
             Since we are dealing with a new application, we cannot accurately determine what our project will evolve to in the future.
 
             Since we are dealing with a new application, we cannot accurately determine what our project will evolve to in the future.
             Connecting bacteria to computer is a completely new way of data exchange, but due to long expression times of
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             Connecting bacteria to a computer is a completely new way of data exchange, but due to long expression times of
 
             fluorescent proteins, it is very unlikely that this interaction might be used for risky actions. There might
 
             fluorescent proteins, it is very unlikely that this interaction might be used for risky actions. There might
             be many applications but we cannot imagine a hazardous one. The potential for the misuse of the biobrick database
+
             be many applications, but we cannot imagine a hazardous one. The potential for the misuse of the biobrick database
             is an inherent problem not only for iGEM, also to all the DIY biology, biohacker movement. To conclude, all team
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             is an inherent problem not only for iGEM, but also for all the DIY biology projects and the biohacker movement. To conclude, all team
             members and all the people who supported us could not imagine a negative and unsafe usage of our project for
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             members and all the people who supported us are aware that the usage of GMOs always implies certain risks for us humans and the environment, but risks can be limited by following the established safety guidelines.
            the future. We are all glad that our project was performed safe.
+
 
 
         </div>
 
         </div>
 
     </div>
 
     </div>

Revision as of 11:54, 31 October 2017

SAFETY

Due to our work in the lab, we had one person who was in charge for the safety precaution. Our “safety authorized person” organized a training for all team members including fire drill and evacuation, how to behave in case of an accident and how to render first aid. This safety training was also about good laboratory practice – correct waste disposal and clean and decent laboratory work. To establish a good laboratory practice, everyone had to wear lab coats, safety glasses and gloves. In addition to this lab safety training, we further had a safety seminar where all people who worked at the institute participated. There we got used to all institute related safety questions. Both safety seminars took place before starting with the lab work. The lab work was carried out within the biosafety guidelines established by the Technical University of Graz. Due to our project, we took part at a skype conference about safety organized by the University of Uppsala. Five teams from all over Europe participated at the conference .  The discussion was about general safety in the lab as well as the the potential risk of the designed constructs and what might happen, if they are released. One of the questions was if we could anticipate how our GEM (Genetically Engineered Machine) would behave, if released. We came to the conclusion that there are no major security vulnerabilities, since we planned our construct according to the iGEM safety guidelines. Aside from the safety precautions for the construct, we only used lab strains with deficiencies such as BL21, XL1-blue, TOP10 or DH5a. Lab strain deficiencies are a selection disadvantage, like lower fitness or lower survivability. On the other hand, the DNA is beneficial for fitter bacteria if transferred. However, we took arrangements to prevent the uncontrolled release, especially the working steps of our student team members had been carefully examined. Here we paid special attention that all the work was performed with regards to the lab safety regulations. If you are interested in more details, you can check out the video here.

Risk of our Project

For our project we used E. coli BL21, XL1-blue and TOP10 strains. These common lab strains provide no risk for the general public. The antibiotic resistances we used were spectinomycin, kanamycin and chloramphenicol. These are common markers that have been used for many years in molecular biology practice and are regarded as safe. Their use in medicine is not relevant anymore, since they have been substituted by more efficient and safe antibiotics with less side effects. Horizontal gene transfer, HGT, could lead to some problems, but that concerns all iGEM teams and synthetic biology projects and is not unique to our work. In our case, we used fluorescence proteins and we cannot imagine a scenario, in which fluorescence proteins help bacteria to survive or provide a selective advantage. Therefore, HGT is not a high risk.

Misuse

Since we are dealing with a new application, we cannot accurately determine what our project will evolve to in the future. Connecting bacteria to a computer is a completely new way of data exchange, but due to long expression times of fluorescent proteins, it is very unlikely that this interaction might be used for risky actions. There might be many applications, but we cannot imagine a hazardous one. The potential for the misuse of the biobrick database is an inherent problem not only for iGEM, but also for all the DIY biology projects and the biohacker movement. To conclude, all team members and all the people who supported us are aware that the usage of GMOs always implies certain risks for us humans and the environment, but risks can be limited by following the established safety guidelines.