Difference between revisions of "Team:Glasgow/Demonstrate"

Revision as of 00:07, 2 November 2017

Glasgow iGEM 2017

Demonstrate

Overview

During the time working on CampyLOCATOR, we carried out many individual sub-projects which, combined, form our biosensing device. Due to time limitations we were unable to get as far as combining them - however, we did showcase working parts of our project on this wiki which could be improved upon with more time. This page contains short descriptions of the work we did demonstrating the functionality of our sub-projects, with links to the pages with longer descriptions if these are of interest.

Mannitol Operon

In the mannitol operon sub-project, we aimed to test an inducible promoter system (mtlR-mtlE) taken from the mannitol operon of Pseudomonas fluorescens. We tested the induction of the linked promoter (PmtlE) with various sugars in order to replicate results from Liu et al (2015).^[1] We produced the following graph:

Figure 3: Plasmids, code names and testing.The top image shows our construct, the part names and their code names. The graph shows OD normalised fluorescence minus L-broth background for each sugar condition. The variant construct plasmids were all tested. The OD reflects the fluorescence of each construct tested in the presence of sugar. Again, ribose and sorbitol show the greatest fluorescence response across the plasmids with the regulatory plus reporter plasmid showing the overall greatest fluorescence levels. The regulatory constructs are in pSB1C3 whilst the reporter plasmids are in PSB3K3. DH5α was used as a control. The bottom table shows the plasmid names and their code names.

The results obtained from our tests do not reflect the findings of Liu et al ^[2]. We got positive results for the working of the regulatory protein, mtlR and its regulated promoter, PmtlE in E. coli in response to ribose and sorbitol. Whilst Liu et al demonstrated a strong response to sorbitol and mannitol, our constructs showed ribose and sorbitol evoke the largest fluorescence response across all plasmids. A potential reason our results do not reflect those of Liu et al is the use of different organisms. Our findings could show that E. coli exhibits a different response to ribose and mannitol than Pseudomonas fluorescens. E. coli may not utilize these sugars in induction of this system and therefore downstream genes are not turned on as they are in Pseudomonas.

Further detail on this sub-project can be found on the mannitol operon page of our wiki.

Mutagenesis of the Arabinose Operon

Xylulose Biosynthesis

Engineering

References

↑ Liu, Y., Rainey, P., and Zhang, X. (2015). Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol.
↑ Cite error: Invalid <ref> tag; no text was provided for refs named Liu

[1] Liu, Y., Rainey, P., and Zhang, X. (2015). Molecular mechanisms of xylose utilization by Pseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol.

[Liu] Cite error: Invalid <ref> tag; no text was provided for refs named Liu

[1]

[2]

@@ Line 24: / Line 24: @@
 <center>
 {{GlasgowWikiImage|image=T-Glasgow-Variants.png|caption=<b>Figure 3: Plasmids, code names and testing.</b>The top image shows our construct, the part names and their code names. The graph shows OD normalised fluorescence minus L-broth background for each sugar condition. The variant construct plasmids were all tested. The OD reflects the fluorescence of each construct tested in the presence of sugar. Again, ribose and sorbitol show the greatest fluorescence response across the plasmids with the regulatory plus reporter plasmid showing the overall greatest fluorescence levels. The regulatory constructs are in pSB1C3 whilst the reporter plasmids are in PSB3K3. DH5α was used as a control. The bottom table shows the plasmid names and their code names. }} </center>
 The results obtained from our tests do not reflect the findings of Liu et al <ref name= "Liu"/>. We got positive results for the working of the regulatory protein, mtlR and its regulated promoter, PmtlE in <i>E. coli</i> in response to ribose and sorbitol. Whilst Liu et al demonstrated a strong response to sorbitol and mannitol, our constructs showed ribose and sorbitol evoke the largest fluorescence response across all plasmids. A potential reason our results do not reflect those of Liu et al is the use of different organisms. Our findings could show that <i>E. coli</i> exhibits a different response to ribose and mannitol than <i>Pseudomonas fluorescens</i>. E. coli may not utilize these sugars in induction of this system and therefore downstream genes are not turned on as they are in <i>Pseudomonas</i>.
+Further detail on this sub-project can be found on the [https://2017.igem.org/Team:Glasgow/mtlR mannitol operon] page of our wiki.
 ==Mutagenesis of the Arabinose Operon==