Difference between revisions of "Team:Glasgow"

 
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<!DOCTYPE html>
+
{{GlasgowHeader}}<html>
<!-- Template by Quackit.com -->
+
<div class="photo-block" id="Frontpage">
<!-- Images by various sources under the Creative Commons CC0 license and/or the Creative Commons Zero license. -->
+
<div class="text left">
<html lang="en">
+
<div class="title">
 
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<i>Campy</i>LOCATOR
<script>
+
 
+
// This is the jquery part of your template. 
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// Try not modify any of this code too much since it makes your menu work.
+
 
+
$(document).ready(function() {
+
 
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$("#HQ_page").attr('id','');
+
 
+
// call the functions that control the menu
+
menu_functionality();
+
hide_show_menu();
+
 
+
 
+
 
+
//this function controls the expand and collapse buttons of the menu and changes the +/- symbols
+
function menu_functionality() {
+
 
+
//when clicking on a "menu_button", it will change the "+/-" accordingly and it will show/hide the corresponding submenu
+
$(".menu_button").click(function(){
+
 
+
// add or remove the class "open" , this class holds the "-"
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$(this).children().toggleClass("open");
+
// show or hide the submenu
+
$(this).next('.submenu_wrapper').fadeToggle(400);
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});
+
 
+
// when the screen size is smaller than 800px, the display_menu_control button appears and will show/hide the whole menu
+
$("#display_menu_control").click(function(){
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$('#menu_content').fadeToggle(400);
+
});
+
 
+
// call the current page highlight function
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highlight_current_page();
+
}
+
 
+
 
+
// call the highlight current page function to show it on the menu with a different background color
+
function highlight_current_page() {
+
 
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// select a page from the menu based on the id assigned to it and the current page name and add the class "current page" to make it change background color
+
$("#"+  wgPageName.substring(wgPageName.lastIndexOf("/")+1, wgPageName.length ) + "_page").addClass("current_page");
+
 
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// now that the current_page class has been added to a menu item, make the submenu fade in
+
$(".current_page").parents(".submenu_wrapper").fadeIn(400);
+
// change the +/- symbol of the corresponding menu button
+
$(".current_page").parents(".submenu_wrapper").prev().children().toggleClass("open");
+
+
}
+
 
+
 
+
 
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// allow button on the black menu bar to show/hide the side menu
+
function hide_show_menu() {
+
+
// in case you preview mode is selected, the menu is hidden for better visibility
+
if (window.location.href.indexOf("submit") >= 0) {
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$(".igem_2017_menu_wrapper").hide();
+
}
+
 
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// if the black menu bar has been loaded
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  if (document.getElementById('bars_item')) {
+
 
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// when the "bars_item" has been clicked
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$("#bars_item").click(function() {
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$("#sideMenu").hide();
+
 
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// show/hide the menu wrapper
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$(".igem_2017_menu_wrapper").fadeToggle("100");
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});
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  }
+
 
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// because the black menu bars loads at a different time than the rest of the page, this function is set on a time out so it can run again in case it has not been loaded yet
+
else {
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    setTimeout(hide_show_menu, 15);
+
}
+
}
+
 
+
 
+
});
+
 
+
 
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</script>
+
 
+
 
+
 
+
 
+
 
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<style>
+
 
+
 
+
 
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/***************************************************** DEFAULT WIKI SETTINGS  ****************************************************/
+
+
/* Clear the default wiki settings */
+
+
#home_logo, #sideMenu { display:none; }
+
#sideMenu, #top_title, .patrollink  {display:none;}
+
#content { width:100%; padding:0px;  margin-top:-7px; margin-left:0px;}
+
body {background-color:white; }
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#bodyContent h1, #bodyContent h2, #bodyContent h3, #bodyContent h4, #bodyContent h5 { margin-bottom: 0px; }
+
 
+
+
+
+
/**************************************************************** MENU ***************************************************************/
+
/* Wrapper for the menu */
+
.igem_2017_menu_wrapper {
+
width: 15%;
+
height:100vh;
+
position:fixed;
+
right:0%;
+
padding:0px;
+
float:right;
+
border-left: 1px solid #d3d3d3;
+
background-color:#333333;
+
text-align:left;
+
font-family:Tahoma, Geneva, sans-serif;
+
overflow-y: auto;
+
overflow-x: hidden;
+
}
+
 
+
/* this hides the scrollbar to keep view consistency */
+
.igem_2017_menu_wrappe::-webkit-scrollbar {
+
display: none;
+
}
+
+
+
/* styling for links in the menu, removes the line under text */
+
.igem_2017_menu_wrapper a { 
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text-decoration: none;
+
}
+
 
+
 
+
/* styling for the images in the menu */
+
.igem_2017_menu_wrapper img {
+
width: 100%;
+
}
+
 
+
/* styling for the menu buttons */
+
.igem_2017_menu_wrapper .menu_button {
+
width: 100%;
+
padding: 10px 0px 10px 15px;
+
float:left;
+
border-bottom: 1px solid #d3d3d3;
+
font-size: 12px;
+
font-weight: bold;
+
color: white;
+
cursor: pointer;
+
}
+
 
+
 
+
.igem_2017_menu_wrapper .menu_bottom_padding {
+
width: 100%;
+
height: 30px;
+
float:left;
+
}
+
 
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.menu_button.direct_to_page {
+
padding-left: 36px;
+
}
+
 
+
 
+
.igem_2017_menu_wrapper .menu_button .expand_collapse_icon {
+
width:10%;
+
float:left;
+
}
+
 
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.igem_2017_menu_wrapper .menu_button .expand_collapse_icon::before {
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content: "+"; 
+
}
+
+
.open::before {
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content: "-" !important; 
+
}
+
+
+
+
/* styling for the menu buttons on hover */
+
.igem_2017_menu_wrapper .menu_button:hover, .igem_2017_menu_wrapper .submenu_button:hover ,  .submenu_button.current_page:hover {
+
background-color: #3399ff;
+
text-decoration: none;
+
color:#ffffff;
+
}
+
 
+
/* styling for the menu button when it is the current page */
+
.current_page {
+
background-color:#7fc1f7  !important;
+
color:#5e5f5f !important;
+
}
+
 
+
 
+
/* styling for the submenu buttons */
+
.igem_2017_menu_wrapper .submenu_button {
+
width: 100%;
+
padding: 10px 0px 10px 34px;
+
float:left;
+
background-color:#f2f2f2;
+
border-bottom: 1px solid #d3d3d3;
+
font-size: 12px;
+
color: #5e5f5f;
+
cursor: pointer;
+
}
+
 
+
/* wrapper for the submenu items, they are hidden by default*/
+
.igem_2017_menu_wrapper .submenu_wrapper {
+
display:none;
+
}
+
 
+
/* when the page size is bigger than 800px, this show/hide control is hidden by default */
+
.igem_2017_menu_wrapper #display_menu_control {
+
display:none;
+
text-align:center;
+
}
+
+
 
+
/***************************************************** CONTENT OF THE PAGE ****************************************************/
+
 
+
/* Wrapper for the content */
+
.igem_2017_content_wrapper {
+
width: 100%;
+
                height: 100%;
+
margin: 0%;
+
display:block;
+
float:left;
+
background: #b3daff;
+
                background: -webkit-linear-gradient(to right, #b3daff, #ffffff,#b3daff);
+
                background: -moz-linear-gradient(to right, #b3daff, #ffffff,#b3daff);
+
                background: linear-gradient(to right, #b3daff, #ffffff, #b3daff);
+
font-family:Tahoma, Geneva, sans-serif;
+
}
+
 
+
 
+
/********************************* HTML STYLING  *********************************/
+
 
+
/* styling for the titles h1 h2 */
+
.igem_2017_content_wrapper h1, .igem_2017_content_wrapper h2 {
+
padding:5px 15px;
+
border-bottom: 0px;
+
color: #3399ff;
+
}
+
 
+
 
+
/* styling for the titles  h3 h4 h5 h6*/
+
.igem_2017_content_wrapper h3, .igem_2017_content_wrapper h4, .igem_2017_content_wrapper h5, .igem_2017_content_wrapper h6 {
+
padding:5px 15px;
+
border-bottom:0px;
+
color: #000000; 
+
}
+
 
+
 
+
/* font and text */
+
.igem_2017_content_wrapper p {
+
padding: 0px 15px;
+
font-size: 13px;
+
}
+
 
+
/* Links */
+
.igem_2017_content_wrapper a {
+
font-weight: bold;
+
text-decoration: underline;
+
text-decoration-color: #3399ff;
+
color:  #3399ff;
+
-webkit-transition: all 0.4s ease;
+
-moz-transition: all 0.4s ease;
+
-ms-transition: all 0.4s ease;
+
-o-transition: all 0.4s ease;
+
transition: all 0.4s ease;
+
}
+
 
+
/* hover for the links */
+
.igem_2017_content_wrapper a:hover {
+
text-decoration:none;
+
color:#000000;
+
}
+
 
+
/* non numbered lists */
+
.igem_2017_content_wrapper ul {
+
padding:0px 20px;
+
font-size: 13px;
+
font-family:Tahoma, Geneva, sans-serif;
+
}
+
 
+
/* numbered lists */
+
.igem_2017_content_wrapper ol {
+
padding:0px;
+
font-size: 13px;
+
font-family:Tahoma, Geneva, sans-serif;
+
}
+
 
+
/* Table */
+
.igem_2017_content_wrapper table {
+
width: 97%;
+
margin:15px 10px;
+
border: 1px solid #d3d3d3;
+
border-collapse: collapse;
+
}
+
 
+
/* table cells */
+
.igem_2017_content_wrapper  td {
+
padding: 10px;
+
vertical-align: text-top;
+
border: 1px solid #d3d3d3;
+
border-collapse: collapse;
+
}
+
 
+
/* table headers */
+
.igem_2017_content_wrapper th {
+
padding: 10px;
+
vertical-align: text-top;
+
border: 1px solid #d3d3d3;
+
border-collapse: collapse;
+
background-color:#f2f2f2;
+
}
+
 
+
 
+
/**********************************LAYOUT CLASSES **********************************/
+
 
+
/* general class for column divs */
+
.igem_2017_content_wrapper .column  {
+
padding: 10px 0px;
+
float:left;
+
}
+
 
+
/* class for a full width column */
+
.column .full_size {
+
width:100%;
+
}
+
 
+
/* styling for images in a full width column*/
+
.column.full_size img {
+
width:97%;
+
padding: 10px 15px;
+
}
+
 
+
/* class for a half width column */
+
.column.half_size {
+
width: 50%;
+
}
+
/* styling for images in a half width column*/
+
.column.half_size img {
+
width: 94.5%;
+
padding: 10px 15px;
+
}
+
 
+
 
+
 
+
 
+
/********************************* SUPPORT CLASSES ********************************/
+
 
+
/* class that clears content below*/
+
.igem_2017_content_wrapper .clear {
+
clear:both;
+
}
+
+
+
/* adds extra spacing when clearing content */
+
.igem_2017_content_wrapper  .clear.extra_space {
+
height: 30px;
+
}
+
 
+
 
+
/* highlight class, makes content slightly smaller */
+
.igem_2017_content_wrapper .highlight {
+
margin: 0px 15px;
+
padding: 15px 0px;
+
}
+
 
+
 
+
/* highlight class, adds a gray background */
+
.igem_2017_content_wrapper .highlight.gray {
+
background-color: #f2f2f2;
+
}
+
 
+
/* highlight with decoration blue line on top */
+
.igem_2017_content_wrapper .highlight.blue_top {
+
    border-top: 4px solid #3399ff;
+
}
+
 
+
/* highlight with a full blue border decoration */
+
.igem_2017_content_wrapper .highlight.blue_border {
+
    border: 4px solid  #3399ff;
+
}
+
 
+
 
+
/* button class */
+
.igem_2017_content_wrapper .button{
+
max-width: 35%;
+
margin: 30px auto;
+
padding: 12px 10px;
+
    background-color: #3399ff;
+
    text-align: center;
+
  color: #ffffff;
+
-webkit-transition: all 0.4s ease;
+
-moz-transition: all 0.4s ease;
+
-ms-transition: all 0.4s ease;
+
-o-transition: all 0.4s ease; transition: all 0.4s ease; 
+
}
+
 
+
/* styling for button on hover */
+
.igem_2017_content_wrapper .button:hover{
+
background-color: #3399ff;
+
    color: #000000;
+
}
+
 
+
 
+
 
+
 
+
/***************************************************** RESPONSIVE STYLING ****************************************************/
+
 
+
/* IF THE SCREEN IS LESS THAN 1200PX */
+
@media only screen and (max-width: 1200px) {
+
 
+
#content {width:100%; }
+
.igem_2017_menu_wrapper {width:15%; right:0;}
+
.highlight {padding:10px 0px;}
+
.igem_2017_menu_wrapper #display_menu_control { display:none; }
+
#menu_content { display:block;}
+
.menu_button.direct_to_page {padding-left: 17px;}
+
+
}
+
 
+
/* IF THE SCREEN IS LESS THAN 800PX */
+
@media only screen and (max-width: 800px) {
+
 
+
.igem_2017_menu_wrapper { width:100%; height: 15%; position:relative; left:0%;}
+
.igem_2017_content_wrapper {width:100%; margin-left:0px;}
+
.column.half_size  {width:100%; }
+
.column.full_size img, .column.half_size img {  width: 100%; padding: 10px 0px;}
+
.highlight {padding:15px 5px;}
+
.igem_2017_menu_wrapper #display_menu_control { display:block; }
+
#menu_content { display:none;}
+
.igem_2017_menu_wrapper .menu_button .expand_collapse_icon { width: 5%; }
+
.menu_bottom_padding {display:none;}
+
.menu_button.direct_to_page { padding-left: 36px; }
+
}
+
 
+
 
+
+
+
/* special class that the system uses to make sure the team wants a page to be evaluated */
+
.judges-will-not-evaluate {
+
    width: 96.6%;
+
  margin: 5px 15px;
+
  display: block;
+
border: 4px solid #3399ff;
+
    font-weight: bold;
+
}
+
+
</style>
+
 
+
<head>
+
 
+
    <meta charset="utf-8">
+
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
+
    <meta name="viewport" content="width=device-width, initial-scale=1">
+
    <!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags -->
+
 
+
    <title>IGEM 2017</title>
+
 
+
    <!-- Bootstrap Core CSS -->
+
    <link href="https://dl.dropbox.com/s/gi8s5k5sz0lxaji/bootstrap.min.css?dl=0" rel="stylesheet">
+
 
+
    <!-- Custom CSS: You can use this stylesheet to override any Bootstrap styles and/or apply your own styles -->
+
    <link href="https://dl.dropbox.com/s/fbprj8yciqrcts7/custom.css?dl=0" rel="stylesheet">
+
 
+
    <!-- HTML5 Shim and Respond.js IE8 support of HTML5 elements and media queries -->
+
    <!-- WARNING: Respond.js doesn't work if you view the page via file:// -->
+
    <!--[if lt IE 9]>
+
        <script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script>
+
        <script src="https://oss.maxcdn.com/libs/respond.js/1.4.2/respond.min.js"></script>
+
    <![endif]-->
+
 
+
    <!-- Custom Fonts from Google -->
+
    <link href='http://fonts.googleapis.com/css?family=Open+Sans:300italic,400italic,600italic,700italic,800italic,400,300,600,700,800' rel='stylesheet' type='text/css'>
+
   
+
</head>
+
 
+
<div class="igem_2017_menu_wrapper" >
+
 
+
 
+
 
+
<a href="https://2017.igem.org/Team:Glasgow">
+
<img src="https://static.igem.org/mediawiki/2017/7/76/IGEM_Glasgow_2017_MenuBanner.jpeg">
+
</a>
+
 
+
 
+
<!-- this div is hidden by default and will only be displayed if the screen size is too small -->
+
<div class="menu_button" id="display_menu_control">
+
MENU 
+
</div>
+
 
+
<div id="menu_content">
+
+
 
+
 
+
 
+
<a href="https://2017.igem.org/Team:Glasgow">
+
<div class="menu_button direct_to_page">
+
HOME
+
</div>
+
</a>
+
 
+
 
+
 
+
<div class="menu_button">
+
<div class="expand_collapse_icon"> </div> TEAM
+
</div>
+
 
+
<div class="submenu_wrapper" id="team_submenu">
+
+
<a href="https://2017.igem.org/Team:Glasgow/Team">
+
<div class="submenu_button" id="Team_page">
+
Team
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Collaborations">
+
<div class="submenu_button"  id="Collaborations_page">
+
Collaborations
+
</div>
+
</a>
+
+
+
 
</div>
 
</div>
 
+
<div class="sub">
 
+
Detection of <i>Campylobacter jejuni</i> for the prevention of food poisoning </i>
+
+
 
+
<div class="menu_button">
+
<div class="expand_collapse_icon"> </div> PROJECT
+
</div>  
+
 
+
<!-- project submenu -->
+
<div class="submenu_wrapper">
+
+
<a href="https://2017.igem.org/Team:Glasgow/Description">
+
<div class="submenu_button"  id="Description_page">
+
Description
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Design">
+
<div class="submenu_button"  id="Design_page">
+
Design
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Experiments">
+
<div class="submenu_button"  id="Experiments_page">
+
Experiments
+
</div>
+
</a>
+
 
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Notebook">
+
<div class="submenu_button"  id="Notebook_page">
+
Notebook
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/InterLab">
+
<div class="submenu_button"  id="InterLab_page">
+
InterLab
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Contribution">
+
<div class="submenu_button"  id="Contribution_page">
+
Contribution
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Model">
+
<div class="submenu_button"  id="Model_page">
+
Model
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Results">
+
<div class="submenu_button"  id="Results_page">
+
Results
+
</div>
+
</a>
+
 
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Demonstrate">
+
<div class="submenu_button"  id="Demonstrate_page">
+
Demonstrate
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Improve">
+
<div class="submenu_button"  id="Improve_page">
+
Improve
+
</div>
+
</a>
+
 
+
<a href="https://2017.igem.org/Team:Glasgow/Attributions">
+
<div class="submenu_button"  id="Attributions_page">
+
Attributions
+
</div>
+
</a>
+
 
+
 
</div>
 
</div>
 
+
</div>
+
</div>
+
<div class="text-block" id="project-desc">
+
<div class="title">
+
Project Description
 
+
</div>
<div class="menu_button">
+
<div class="copy_container row">
<div class="expand_collapse_icon"> </div> PARTS
+
<div class="large-6 columns">
 +
<p class="copy">
 +
<i>Campylobacter </i> species, especially <i>Campylobacter jejuni</i>, are bacterial pathogens responsible for the majority of food poisoning in the UK. This bacteria is considered to cause over 280,000 cases of bacterial gastroenteritis annually. Although also found on red meat, unpasteurized milk and unfiltered water, 4 out of 5 cases of campylobacteriosis come from contaminated chickens. During the slaughter process the bacterium gets transferred onto the chicken skin and is often found on fresh retail chickens and their packaging. The most important transmission route is consumption of undercooked chicken or other foods that get cross-contaminated from raw poultry meat. </p>
 
</div>
 
</div>
+
<div class="large-6 columns">
<!-- parts submenu -->
+
<p class="copy"> Current detection systems for the pathogen are time-consuming, expensive and inaccessible for everyday users. We therefore aimed to develop a new, cheaper and faster system for detection of <i>C. jejuni</i> using synthetic biology. We approached this by genetically engineering <i>Escherichia coli</i> to serve a function of a dual-input biosensor. The bacterium will sense bacterial quorum sensing signals and xylulose - a sugar naturally present in the outer capsule of <i>Campylobacter jejuni</i>, to detect the pathogen on a swabbed surface. </p>
<div class="submenu_wrapper">
+
<p class="copy"></p>
+
</div>
<a href="https://2017.igem.org/Team:Glasgow/Parts">
+
</div>
<div class="submenu_button"  id="Parts_page">
+
</div>
Parts
+
<div class="photo-block" id="Ceremony">
</div>
+
<div class="text right">
</a>
+
<div class="title">
 
+
<a href="https://2017.igem.org/Team:Glasgow/Accomplishments">Our Accomplishments at the Jamboree!</a>
<a href="https://2017.igem.org/Team:Glasgow/Basic_Part">
+
</div>
<div class="submenu_button" id="Basic_Part_page">
+
</div>
Basic Parts
+
</div>
</div>
+
<div class="photo-block" id="Xylulose">
</a>
+
<div class="text right">
 
+
<div class="title">
<a href="https://2017.igem.org/Team:Glasgow/Composite_Part">
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Latest revision as of 21:00, 15 December 2017

Glasgow iGEM 2017
CampyLOCATOR
Detection of Campylobacter jejuni for the prevention of food poisoning
Project Description

Campylobacter species, especially Campylobacter jejuni, are bacterial pathogens responsible for the majority of food poisoning in the UK. This bacteria is considered to cause over 280,000 cases of bacterial gastroenteritis annually. Although also found on red meat, unpasteurized milk and unfiltered water, 4 out of 5 cases of campylobacteriosis come from contaminated chickens. During the slaughter process the bacterium gets transferred onto the chicken skin and is often found on fresh retail chickens and their packaging. The most important transmission route is consumption of undercooked chicken or other foods that get cross-contaminated from raw poultry meat.

Current detection systems for the pathogen are time-consuming, expensive and inaccessible for everyday users. We therefore aimed to develop a new, cheaper and faster system for detection of C. jejuni using synthetic biology. We approached this by genetically engineering Escherichia coli to serve a function of a dual-input biosensor. The bacterium will sense bacterial quorum sensing signals and xylulose - a sugar naturally present in the outer capsule of Campylobacter jejuni, to detect the pathogen on a swabbed surface.

Using synthetic biology to create a biosensor for detection of Campylobacter jejuni, a bacteria linked to food poisoning.